PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.IJ9YQ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 224aa    MW: 25239.4 Da    PI: 10.0232
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.IJ9YQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00137395123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C  C+++F ++  L  H++ H
  Aradu.IJ9YQ 73 FPCLFCSRTFYSSQALGGHQNAH 95
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.01E-670100No hitNo description
PROSITE profilePS5015711.01173100IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
SKAKKQTQIS THIETLLFFE SLYLFTFQPF VFFLLQFILI CSHIPQDSEM GDKKNPTKVG  60
GESPREDATR RVFPCLFCSR TFYSSQALGG HQNAHKKERT AARRSQKYSQ PSPNPPPMAF  120
APTLHQLGVF NSNPSMFITA HAANLHCLQN NQIHEQFGSN NGAPRFGNYP FLQGRRISSN  180
SNGFSDGDGE KGYCGKWQSS IRSSNSNVGI RREKEHKLDL SLHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015950025.11e-129PREDICTED: protein LATE FLOWERING-like
TrEMBLA0A0B2PHL03e-49A0A0B2PHL0_GLYSO; Zinc finger protein 7
TrEMBLK7LAT93e-49K7LAT9_SOYBN; Uncharacterized protein
STRINGGLYMA08G47140.27e-49(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.17e-15zinc finger protein 3